This is a list of gene families or gene complexes, that is sets of genes which occur across a number of different species which often serve similar biological functions. These gene families typically encode functionally related proteins, and sometimes the term gene families is a shorthand for the sets of proteins that the genes encode. They may or may not be physically adjacent on the same chromosome.
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Source[1]
14-3-3 family
ABC Superfamily
ABC Transporters
ABC Transporters- PDR subfamily
AGC Kinase Gene Family
Aldehyde Dehydrogenase Gene Family
Amino Acid/Auxin Permease AAAP Family
Acyl Lipid Metabolism Gene Families
Antiporters
Aquaporins
ARIADNE family
AS2 family
basic Helix-Loop-Helix Transcription Factor Gene Family
Basic region leucine zipper (bZIP) Transcription Factor Gene Family
Calcium Dependent Protein Kinase
Calmodulin-binding Proteins
Carbohydrate Esterase
CBL-interacting serine-threonine protein kinases
Cell Wall Biosynthesis
Chloroplast and Mitochondria Gene Families
COBRA Gene Family
Core Cell Cycle Gene Families
Cytochrome P450
Cytochrome b5
Cytoplasmic Ribosomal Protein Gene Family
Cytoskeleton Gene Families
DOF Gene Family
EF-hand Containing Proteins
Equilibrative Nucleoside Transporter Gene Family (ENT)
Eukaryotic Initiation Factors Gene Family
Expansin Gene Family
F-Box Gene Family
FH2 protein (formin) Gene Family
FtsH Gene Family
Glycoside Hydrolase
Glycosyltransferase
GRAS Gene Family
Arabidopsis Glutathione S-transferase Gene Family
Heat shock transcription factors Hsfs
Histidine Kinase Gene Family
Histidine Phosphotransfer Proteins
IDZ Gene Family
Inorganic Solute Cotransporters
Ion Channels
Lateral Organ Boundaries Gene Family
Leucine-rich Repeat extensin Gene Families
Lipid Metabolism Gene Families
Kinesins gene family
Major Intrinsic Protein MIP
MAP Kinase Gene Family
MAP Kinase Kinase Gene Family
MAP Kinase Kinase Kinase
MAP Kinase Kinase Kinase Kinase
Miscellaneous Gene Families
MLO family
Monolignol Biosynthesis Gene Families
Monosaccharide Transporter(-like) Gene Family
MRS2 Gene Family
MYB family
Myosins gene family
NADPH P450 reductases
Nicotianamine Synthase Gene Family
Nodulin-like Gene Family
Nucleobase Ascorbate Transporter Gene Family
Organic Solute Cotransporters
Peroxidase, class III
Phospholipase D Gene Family (Zarsky group)
Phospholipase D Gene Family (Wang group)
Plant Defensins Gene Families
Polysaccharide Lyase
Pollen Coat Proteome
PP2C-type Phosphatase Gene Family
Primary Pumps ATPases
PRT Gene Family
RAD5/RAD16-like Gene Family
RCI2 Gene Family
Rapid Response to Elicitors
Receptor kinase-like Gene Family
Response Regulator Gene Family
SBP-box Gene Family
SNARE and Associated Proteins
Single Myb Histone (SMH) Gene Family
Subtilisin-like Serine Gene Family
Sucrose Transporter Gene Family
Sulfurtransferasese/Rhodanese
Strubbelig Receptor Gene Family
Trehalose Biosynthesis Gene Families
Type I MADS-box Gene Family
MADS like Gene Family
MADS-box Gene Family
U-box Gene Family
Wox Gene Family
WRKY Transcription Factor Superfamily
Xyloglucan Fucosyltransferase1
Zinc finger-homeobox gene family